With today's update for our malware scanner, you can exclude files and / or directories from the scan.
We added the --exclude argument, which can be used with wildcards, e. g. --exclude=/var/www/**/log or --exclude=/var/www/domain.com/
* will match all characters but /, ** matches all characters including / (the directory separator). Read more about excluding files from the scan in our ISPProtect documentation.

Excluding files and directories from malware scan